Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown | Nature Protocols
Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin | Genome Biology | Full Text
The Cufflinks RNA-Seq workflow
Quantification of RNA-seq with Cufflinks (with de-novo assembly) for FASTQ files (workflow) - BioUML platform
iPlant Tuxedo Protocol RNA-Seq (1 of 2) - YouTube
Quantification of transcript abundance using Salmon | Introduction to RNA- Seq using high-performance computing - ARCHIVED
Quantification of RNA-seq with Cufflinks for multiple BAM files (workflow) - BioUML platform
PPT - Bioinformatics Workflow of RNA-Seq PowerPoint Presentation, free download - ID:8066827
StringTie – improved reconstruction of a transcriptome from RNA-Seq reads | RNA-Seq Blog
Overview of the RNA-seq–based cardiac transcriptome assembly. (A) The... | Download Scientific Diagram
A comparative study of RNA-Seq and microarray data analysis on the two examples of rectal-cancer patients and Burkitt Lymphoma cells | PLOS ONE
A comparison of transcriptome analysis methods with reference genome | BMC Genomics | Full Text
Introduction to RNAseq Analysis
RNA-Seq - Wikipedia
Genes | Free Full-Text | RNA-Seq Profiling between Commercial and Indigenous Iranian Chickens Highlights Differences in Innate Immune Gene Expression
Establishment of bioinformatics pipeline for deciphering the biological complexities of fragmented sperm transcriptome - ScienceDirect
Flow diagram of methods used in the analysis of RNA-seq data. Method... | Download Scientific Diagram
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation | Nature Biotechnology
RNA-seq gene profiling - a systematic empirical comparison | bioRxiv
Expression and Differential Expression - YouTube
Introduction to tophat cufflinks workflow - Bioinformatics Team (BioITeam) at the University of Texas - UT Austin Wikis
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks | Nature Protocols
